PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04160.1.g00010.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 121aa    MW: 13779.2 Da    PI: 11.5305
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04160.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.5e-2855103250
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   rien++ rqvtfskRr g++KKA+EL +LCdaev +++fsstg+lye++
  Zpz_sc04160.1.g00010.1.am.mk  55 RIENTTSRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSSTGHLYEFA 103
                                   8***********************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-3019105IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-234868IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.08654106IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-2454106IPR002100Transcription factor, MADS-box
PfamPF003197.4E-2755102IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-236883IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-2383104IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MPRFLTWLVV ASRADRLICA RPKLSCLCRA HGQRRPRRPH AVKEQPRKKA NPPNRIENTT  60
SRQVTFSKRR SGLFKKAKEL AILCDAEVGL VVFSSTGHLY EFANTRFVLL VSSCFLAKLD  120
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1121492e-36AF112149.1 Zea mays MADS box protein 2 (mads2) mRNA, complete cds.
GenBankAH0127032e-36AH012703.2 Zea mays cultivar A 188 MADS-box transcription factor MADS2 (mads2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6Z6W21e-24MAD57_ORYSJ; MADS-box transcription factor 57
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7197822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-24AGAMOUS-like 21